UCSCXenaShiny

A Shiny App for UCSC Xena Database


Keywords
cancer-dataset, r, r-package, shiny-apps, ucsc-xena
License
MIT

Documentation

XenaShiny

CRAN status lifecycle emoji-log Travis build status AppVeyor build status Coverage status

The goal of UCSCXenaShiny is to provide a web app for downloading, analyzing and visulizing datasets from UCSC Xena, which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Installation

You can install stable release of UCSCXenaShiny from CRAN with:

install.packages("UCSCXenaShiny")

You can install the development version of UCSCXenaShiny from Github with:

remotes::install_github("openbiox/XenaShiny")

Usage

First load package:

library(UCSCXenaShiny)

Then run the following command in console:

app_run()

Developer

  • Shixiang Wang
  • Yi Xiong
  • Longfei Zhao
  • Kai Gu
  • Yin Li
  • Fei Zhao

LICENSE

MIT © Openbiox