clustermole

Unbiased Single-Cell Transcriptomic Data Cell Type Identification


Keywords
cell-type, cell-type-annotation, cell-type-classification, cell-type-identification, cell-type-matching, gene-expression-signatures, scrna-seq, single-cell
License
MIT

Documentation

clustermole: exploratory scRNA-seq cell type analysis

The clustermole R package (available on CRAN) provides methods to query cell identity markers sourced from a variety of databases. It includes three primary features:

  • a meta-database of human and mouse markers for thousands of cell types
  • cell type prediction based on a set of marker genes
  • cell type prediction based on a table of expression values

Check the documentation website for more information.