Master2021
Thesis repo contains the Python and R code created by Breya McGlown under the guidance of E. Olusegun George.
Both languages provide the end user the opportunity to utilize six fundamental statistics used for combination of p-values and calculate the combined p value based on the method selected, typically used during Meta-analyses.
To Use:
Python:
1) pip install P-CombiningPValuesFinal
2) Below is an example of how to use the functions within the package, also refer to tests in the packaging_tutorial folder
inputs = list(input1['x'].values.flatten())
Input = A.InfinitePs(inputs[0:5])
Output1 = A.StoufferMethod(Input[0])
SignOrNot = cp.CombinedPvalue(output = Output1, Input = Input[0])
3) The function CombinedPvalue will return the combined p-value based on the method selected
R:
1) install.packages("combinationpvalues")
2) Below is an example of how to use the functions within the package, also refer to the examples in the package by calling example("combinationpvalues")
Output <- InfinitePs(0.1,0.3,.7)
Final <- TippettMethod(Output)
Combined <- CombinedPValueMethod(Final,"Tippett")
3) The function CombinedPValueMethod will return the combined p-value based on the method selected
