prof.tree
Provide an alternative profiling data diplay as tree structure.
Installation
To install the latest release version from CRAN with:
install.packages("RGA")To install the development version the install_github() function from devtools package can be used:
devtools::install_github("artemklevtsov/prof.tree")Example
times <- 4e5
cols <- 150
data <- as.data.frame(x = matrix(rnorm(times * cols, mean = 5), ncol = cols))
data <- cbind(id = paste0("g", seq_len(times)), data)
Rprof(tmp <- tempfile())
data1 <- data # Store in another variable for this run
# Get column means
means <- apply(data1[, names(data1) != "id"], 2, mean)
# Subtract mean from each column
for (i in seq_along(means))
data1[, names(data1) != "id"][, i] <- data1[, names(data1) != "id"][, i] - means[i]
Rprof(NULL)
library(prof.tree)
prof.tree(tmp)
unlink(tmp)
#> levelName real percent env
#> 1 * 1.50 100.0 %
#> 2 ¦--`apply` 0.94 62.7 % base
#> 3 ¦ ¦--`as.matrix` 0.16 10.7 % base
#> 4 ¦ ¦ °--`as.matrix.data.frame` 0.16 10.7 % base
#> 5 ¦ ¦ °--... 1 nodes w/ 0 sub NA
#> 6 ¦ ¦--`aperm` 0.30 20.0 % base
#> 7 ¦ ¦ °--... 1 nodes w/ 0 sub NA
#> 8 ¦ °--`FUN` 0.04 2.7 %
#> 9 ¦ °--... 1 nodes w/ 0 sub NA
#> 10 ¦--`[<-` 0.44 29.3 % base
#> 11 ¦ °--`[<-.data.frame` 0.44 29.3 % base
#> 12 ¦ ¦--`order` 0.26 17.3 % base
#> 13 ¦ ¦ °--... 3 nodes w/ 3 sub NA
#> 14 ¦ °--... 1 nodes w/ 6 sub NA
#> 15 °--`-` 0.12 8.0 % baseBug reports
First check the changes in the latest version of the package. Type type into R:
news(package = "prof.tree", Version == packageVersion("prof.tree"))Try reproduce a bug with the latest development version from Git.
To report a bug please type into R:
utils::bug.report(package = "prof.tree")Post the traceback() and sessionInfo() output also may be helpful.
