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running Dia-Umpire container in Windows BioContainers/containers

I have the following error: ``` bash $ docker run -v //D/processing_data/External/LudovicGillet_SWATH_benchmark/TTOF6600_160305/mzML:/data/ biodckr/dia-umpire java -jar -Xmx8G /home/biodocker/bin/...

Created - 0 comments - bug help wanted

MechTA automatically replaces grades with TA review grades if a TA review happens after grades ar... madhavsuresh/mtalib

I would prefer if grades were not changed unless we change them. We aren't storing grades anywhere else, so if these get overwritten then they are lost. (It's better for grades, after they are ...

Created - 0 comments - bug critical priority help wanted lack of MTA understanding question

curve fit trouble on-escience2016/pythonlearn

scipy.optimize.curve_fit is not fitting

Created - 0 comments - bug help wanted

Sess freeze when print test accuracy rucub100/HHU_ML_DL_WS_2016_17

In cnn.py the code `print("test accuracy %g"%accuracy.eval(feed_dict={ x: mnist.test.images, y_: mnist.test.labels, keep_prob: 1.0}))` cause a freeze of the sess. I have just an ass...

Created - 0 comments - bug help wanted

Fama-French should use multivariate regression quantopian/pyfolio

https://github.com/quantopian/pyfolio/blob/master/pyfolio/timeseries.py#L563 shows we are using separate linear regressions which is problematic because the factors are confounded. We should in...

Created - 1 comment - bug help wanted high priority

indices.calc_indice_percentile returns false output bird-house/flyingpigeon

See the code: https://github.com/bird-house/flyingpigeon/blob/master/flyingpigeon/indices.py#L280 This functions is currently "under construction" ... but it returns a false output. See al...

Created - 2 comments - bug help wanted

image resize for general cases hnarayanan/artistic-style-transfer

Hi Harish, There could be an error in the 6th notebook when you tried to resize the image using resize((height, width)). Turns out it should be resize((width, height)) as I was trying on some mo...

Created - 2 comments - bug help wanted

linefit fails when using Vlas' solution of a 2D error map kristina-monsch/ammonia_project

I have implemented your and Vlas' suggestions in order to get rid of the worm-like structures in the linefit. 1. I have run the linefit on the (1,1) line only with a fixed kinetic temperature of `...

Created - 2 comments - bug help wanted

Alt Az of Moon from this does not match with Stellarium shreyasbapat/Alt-Az-Generator

The Data for moon is not matching.

Created - 2 comments - bug help wanted

Bug: torchvision/transforms/functional/to_pil_image always converts 1-channel (gray) FloatTensor ... pytorch/vision

- OS: Ubuntu 16.04.4 LTS x64 - PyTorch version: 0.3.0 - Torchvision version: 0.2.0 - How you installed PyTorch (conda, pip, source): conda - Python version: 3 - CUDA/cuDNN version: 8.0 - GPU ...

Created - 3 comments - bug help wanted

EasyPreprocessor fails on categorical data as integers with missing values amueller/dabl

Filling missing int or float values with ``dabl_missing`` breaks. We might want to call ``clean`` on the data first (which converts the categories to string....), or have a separate ``OneHotEncode...

Created - 3 comments - bug help wanted

Add BigR LinearRegression example snowch/biginsight-examples

I.e. ``` ################################################################# #3. Machine Learning example: building a Linear Regression model ########################################################...

Created - 3 comments - bug enhancement help wanted

Minor problem with convert_to_coco_api in coco_utils.py (ann_id initialization) pytorch/vision

Hi, I think `ann_id` should be initialized to 1, not 0, in `convert_to_coco_api`: https://github.com/pytorch/vision/blob/f052c53f512d7076f5415faa0ae65981d355eb90/references/detection/coco_uti...

Created - 4 comments - bug help wanted module: reference scripts topic: object detection

visualisation not available sevamoo/SOMPY

I installed the sompy package successfully and I was able to run the following code (http://nbviewer.jupyter.org/gist/sevamoo/ec0eb28229304f4575085397138ba5b1) until the training step included: ``...

Created - 4 comments - bug help wanted

demo3D47 murphygroup/docker-cellorganizer-jupyter-notebook

``` --------------------------------------------------------------------------- NameError Traceback (most recent call last) <ipython-input-1-574b48740395> in <mod...

Created - 4 comments - bug help wanted

'wminkowski' metric not working - weight array not passing through properly to the distance function scikit-learn-contrib/hdbscan

Hi - I'm trying to use the weighted minkowski metric: ``` clusterer = hdbscan.HDBSCAN(algorithm='best', alpha=1.0, approx_min_span_tree=True, gen_min_span_tree=False, leaf_size=40, ...

Created - 5 comments - bug help wanted

The data and figs for the report creation are copied recursively chaoss/grimoirelab-manuscripts

In each generation of a report the data and figs folders used to create the PDF report file are copied recursively. For example: ``` (acs@dellx) (quarters-titles % u=) ~/devel/grimoirelab-manus...

Created - 5 comments - bug good first issue help wanted

No module named 'mywb.sklearn_cookbook' jupyter-incubator/contentmanagement

The tmpnb online test_cookbooks example worked flawlessly. However I'm running into errors when I try to run same notebook from the cloned repository on my windows 10 machine. The new search f...

Created - 7 comments - bug help wanted

tree node labels are displayed incorrectly on MacSafari Brunel-Visualization/Brunel

tree node labels are displayed incorrectly on MacSafari. See below: ![brunel_treediagram_macsafari_nodetextbug](https://cloud.githubusercontent.com/assets/21226717/19698147/b04c7c46-9ab3-11e6-9d25-...

Created - 7 comments - bug help wanted

configurations are not installed when installing ontobio biolink/ontobio

I'm running on Ubuntu 14.04, using python3: ```shell (venv) lance@Lance-PC:~/git/2017/ontobio_test$ python --version Python 3.4.3 (venv) lance@Lance-PC:~/git/2017/ontobio_test$ pip --version ...

Created - 7 comments - bug help wanted

Low level failure when calculations get large on Mono fsprojects/IfSharp

### Description Cells sometimes silently fail to execute variable assignments. Errors are logged in shell.log ### Repro steps 1. Unzip and run the attached notebook file. ### Expected be...

Created - 16 comments - bug help wanted

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