YuLab-SMU/ggtree


christmas_treeVisualization and annotation of phylogenetic trees

https://yulab-smu.github.io/treedata-book/

Language: R

Keywords: annotations, ggplot2, phylogenetic-trees, r, visualization


ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

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Project Status: Active - The project has reached a stable, usable state and is being actively developed. codecov Last-changedate GitHub forks GitHub stars Awesome

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The ggtree package extending the ggplot2 package. It based on grammar of graphics and takes all the good parts of ggplot2. ggtree is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree.

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Please cite the following article when using ggtree:

G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. accepted

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For details, please visit our project website, https://guangchuangyu.github.io/ggtree.

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Project Statistics

Sourcerank 8
Repository Size 15.6 MB
Stars 375
Forks 99
Watchers 27
Open issues 33
Dependencies 20
Contributors 5
Tags 0
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Guangchuang Yu Casey Dunn Justin Silverman Bitdeli Chef bioc-sync

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