hsiaoyi0504/bib-scholarly


A simple wrapper of scholarly

License: Unlicense

Language: Python


Bib-Scholarly

A simple wrapper of scholarly to search BibTex through almost the same title.

Usage

  • pip install -r requirements.txt
  • Save the titles of journal articles in examples.txt. One article title per line or save them in a different file and change the with open(...) line in retrieve.py to point to that file.
  • Use python retrieve.py, then you will get the result in standard output. To save, use redirect operation in shell python retrieve.py > ref.bib
  • Sample command: python retrieve.py will generate following sample output:
@article{czodrowski2013herg,
  title={hERG me out},
  author={Czodrowski, Paul},
  journal={Journal of chemical information and modeling},
  volume={53},
  number={9},
  pages={2240--2251},
  year={2013},
  publisher={ACS Publications}
}

@article{pires2015pkcsm,
  title={pkCSM: predicting small-molecule pharmacokinetic and toxicity properties using graph-based signatures},
  author={Pires, Douglas EV and Blundell, Tom L and Ascher, David B},
  journal={Journal of medicinal chemistry},
  volume={58},
  number={9},
  pages={4066--4072},
  year={2015},
  publisher={ACS Publications}
}

@article{daina2017swissadme,
  title={SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules},
  author={Daina, Antoine and Michielin, Olivier and Zoete, Vincent},
  journal={Scientific Reports},
  volume={7},
  pages={42717},
  year={2017},
  publisher={Nature Publishing Group}
}

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OrganicIrradiation Luciano hsiao yi firefly-cpp Matthew Pfeiffer Alex Ganose Lukas Käll

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