mwpennell/geiger-v2


A suite of methods and models for studying evolutionary radiations

Language: R


Geiger

Build Status

This is the development version of the geiger package for manipulating phylogenetic comparative data and fitting macroevolutionary models. The package can be downloaded from CRAN

install.packages("geiger")

or installed directly from github with the devtools package

install.packages("devtools")
install_github("mwpennell/geiger-v2")

Major features

geiger is a (growing) collection of methods developed over the years by many researchers. Here is a a non-comprehensive list of methods:

Citing geiger

If you use geiger, please cite:

Pennell, M.W., J.M. Eastman, G.J. Slater, J.W. Brown, J.C. Uyeda, R.G. FitzJohn, M.E. Alfaro, and L.J. Harmon. 2014. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics 15:2216-2218.

in addition to the original papers describing the methods.

Feedback

We are always looking to improve geiger. If you have comments/questions/ideas, we encourage you to get in contact by posting an issue or making a pull request.

Project Statistics

Sourcerank 5
Repository Size 1.17 MB
Stars 10
Forks 11
Watchers 11
Open issues 18
Dependencies 12
Contributors 6
Tags 0
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Top Contributors See all

Jonathan Eastman Joseph W. Brown Luke Harmon Matt Pennell Josef Uyeda Rich FitzJohn

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