mwpennell/geiger-v2


A suite of methods and models for studying evolutionary radiations

Language: R


Geiger

Build Status

This is the development version of the geiger package for manipulating phylogenetic comparative data and fitting macroevolutionary models. The package can be downloaded from CRAN

install.packages("geiger")

or installed directly from github with the devtools package

install.packages("devtools")
library(devtools)
install_github("mwpennell/geiger-v2")

Major features

geiger is a (growing) collection of methods developed over the years by many researchers. Here is a a non-comprehensive list of methods:

Citing geiger

If you use geiger, please cite:

Pennell, M.W., J.M. Eastman, G.J. Slater, J.W. Brown, J.C. Uyeda, R.G. FitzJohn, M.E. Alfaro, and L.J. Harmon. 2014. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics 30:2216-2218.

in addition to the original papers describing the methods.

Feedback

We are always looking to improve geiger. If you have comments/questions/ideas, we encourage you to get in contact by posting an issue or making a pull request.

Project Statistics

Sourcerank 11
Repository Size 1.17 MB
Stars 14
Forks 10
Watchers 11
Open issues 20
Dependencies 12
Contributors 9
Tags 0
Created
Last updated
Last pushed

Top Contributors See all

Jonathan Eastman Joseph W. Brown Luke Harmon Matthew Pennell Josef Uyeda Brian O'Meara David Bapst Liam J. Revell Rich FitzJohn

Packages Referencing this Repo

geiger
Analysis of Evolutionary Diversification
Latest release 2.0.6.4 - Updated - 14 stars

Something wrong with this page? Make a suggestion

Last synced: 2020-01-25 16:30:45 UTC

Login to resync this repository