Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources


Keywords
aws, batch-job, bioinformatics, cwl, cwl-workflow, docker, docker-machine, etl-framework, gcp, wdl, wdl-workflow, workflow, workflow-engine
License
GPL-3.0
Install
go get github.com/otiai10/awsub

Documentation

awsub

awsub \
    --aws-vpc [your_vpc] \
    --aws-region ap-northeast-1 \
    --disk-size 200 \
    --min-cores 6 \
    --min-ram 36 \
    --image friend1ws/star-alignment \
    --tasks star-alignment-tasks.tsv \
    --script star-alignment-script.sh