epi-sim
A library for simulating stochastic epidemic models, with a focus on phylodynamics and observation models.
Epidemic events
A realisation of the model is represented by a list of EpidemicEvent
s which
describe the events that occurred.
Available models
Although this package supports the definition of new models there are some that
are implemented already in the Epidemic.Model
module. Implemented models
include:
- Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see
BDSCOD.hs
) - Inhomogeneous Birth-Death-Sampling (see
InhomogeneousBDS.hs
) - Inhomogeneous Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see
InhomogeneousBDSCOD.hs
) - Logistic Birth-Death-Sampling-Disaster (see
LogisticBDSD.hs
)