sequence-formats

Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.


Keywords
gpl, library, Propose Tags, Skip to Readme, , Index, Quick Jump, SequenceFormats.Bed, SequenceFormats.Eigenstrat, SequenceFormats.Fasta, SequenceFormats.FreqSum, SequenceFormats.Genomic, SequenceFormats.Pileup, SequenceFormats.Plink, SequenceFormats.RareAlleleHistogram, SequenceFormats.Utils, SequenceFormats.VCF, sequence-formats-1.8.0.1.tar.gz, browse, Package description, Package maintainers, stephan_schiffels, edit package information , 1.1.4.1, pipes library
License
GPL-3.0-only
Install
cabal install sequence-formats-1.8.0.1

Documentation

Sequence-Formats is a Haskell package to provide file parsers and writers for some commonly, and less commonly used file formats in Bioinformatics, speficially population genetics.

The library makes heavy use of the pipes library to provide Producers and Consumers for reading and writing files.