Kernel density estimators for julia.
The main accessor function is
will construct a
UnivariateKDE object from the real vector
optional keyword arguments are
boundary: the lower and upper limits of the kde as a tuple. Due to the fourier transforms used internally, there should be sufficient spacing to prevent wrap-around at the boundaries.
npoints: the number of interpolation points to use. The function uses fast Fourier transforms (FFTs) internally, so for optimal efficiency this should be a power of 2 (default = 2048).
kernel: the distributional family from Distributions.jl to use as the kernel (default =
Normal). To add your own kernel, extend the internal
bandwidth: the bandwidth of the kernel. Default is to use Silverman's rule.
A related function
will construct a
UnivariateKDE object, with the bandwidth selected by
least-squares cross validation. It accepts the above keyword arguments, except
There are also some slightly more advanced interfaces:
allows specifying the internal grid to use. Optional keyword arguments are
allows specifying the exact distribution to use as the kernel. Optional
keyword arguments are
kde(data, midpoints::Range, dist::Distribution)
allows specifying both the distribution and grid.
The usage mirrors that of the univariate case, except that
data is now
either a tuple of vectors
or a matrix with two columns
Similarly, the optional arguments all now take tuple arguments:
boundary now takes a tuple of tuples
The KDE objects are stored as gridded density values, with attached
coordinates. These are typically sufficient for plotting (see below), but
intermediate values can be interpolated using the
Grid.jl package via the
pdf(k::UnivariateKDE, x) pdf(k::BivariateKDE, x, y)
y are real numbers or arrays.
If you are making multiple calls to
InterpKDE to store the intermediate
ik = InterpKDE(k) pdf(ik, x)
InterpKDE can also take additional arguments specifying the
We plan to include support for other plotting packages: please file an issue if your favourite one is not yet available.