Nextclade

Viral genome clade assignment, mutation calling, and sequence quality checks

by Nextstrain team

🌎 clades.nextstrain.org

📜️ Citation

If you use results obtained with Nextclade in a publication, please

• cite our paper:

  Aksamentov, I., Roemer, C., Hodcroft, E. B., & Neher, R. A., (2021). Nextclade: clade assignment, mutation calling and quality control for viral genomes. Journal of Open Source Software, 6(67), 3773, https://doi.org/10.21105/joss.03773

  (bibtex)

• where possible, provide a link to Nextclade Web:

  https://clades.nextstrain.org

📗 Documentation

• Documentation for Nextclade: https://docs.nextstrain.org/projects/nextclade
• Documentation for the parent project, Nextstrain: https://docs.nextstrain.org

🧑‍💻 Development

Read developer guide here: docs/dev/developer-guide.md

✨ Team

Nextclade is a part of Nextstrain project .

It is maintained by:

We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):

Emma Hodcroft 🤔 ⚠️ 📢 👀	Thomas Sibley 🚇 🛡️	Victor Lin 💻 📖	Theo Sanderson 💻	Natalie Stroud 🖋 🌍	Alex Rubinsteyn 📖	Christopher Bottoms 📖	Finlay Maguire 📖
dnanto 💻 🔣

This project follows the all-contributors specification. Contributions of any kind welcome!

🏢 Sponsors

We are thankful to the following companies who supported us:

Vercel for sponsoring Nextclade builds on their platform

⚖️ License

MIT License