Biclustering-SSVD

Sparse SVD Algorithm for Biclustering


Keywords
SVD
License
MIT
Install
pip install Biclustering-SSVD==1

Documentation

Biclustering-SSVD

Implementation of the sparse singular value decomposition algorithm (Lee et al., 2010) to be used for Biclustering; Duke STA663 Final Project

The Sparse SVD First Pass notebook implements the algorithm from Lee et al., 2010, whose code is publically available in matlab and R (see ssvd.R, ssvd.m, and thresh.m). Data.txt is the application example dataset (the genes example) provided by the authors of the paper. The paper, Lee et al., 2010, can be found at ssvd.pdf.

TODO: This code is not optimized and runs quite slowly...must optimize in future versions.