DNASkittleUtils

Fasta file handling utility functions that have been useful to me along the way. Python 2-3 compatible. No heavy dependencies.

• Read FASTA contigs into python objects
• Various sorting and filtering for contigs
• Assembly stats N50, N75, L50, GC%
• Run command line programs
• Script tools together

Install

Use pip to install the latest version from this repo:
pip install git+https://github.com/josiahseaman/DNASkittleUtils.git --upgrade