Wigman

Generate heatmap files from BigWig data.

Example

Run the script:

In order to run the plotting script, you need a config "instruction" file. The file should look like the following template:

Bed/Wig/pdf filename    min max step    title   description

My config.txt contains the following:

bed hg19/tata_plus.bed  50  50  TATA-Plus
bed hg19/tata_minus.bed 50  50  TATA-Minus
bw  hg19.100way.phyloP100way.bw -4  5   2   BuRd    PhyloP  Conservation
bw  ENCFF000SLA.bigWig  0   55  25  Hot DNase   Signal
bw  ENCFF000SPQ.bigWig  0   25  10  Hot DNase   Signal
bw  GSM1480321_K562_GROcap_wTAP_plus.bigWig 0   11  5   Reds    Plus    Read
bw  GSM1480321_K562_GROcap_wTAP_minus.bigWig    -10 1   5   Blues   Minus   Read
pdf tata_profile.png    size

Then run the following command:

main.py config.txt