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Simple and fast genome reference retrieve
pip install bgreference==0.7
bgreference is a library to fast retrive Genome Reference partial sequences.
conda install -c bbglab bgreference
pip install bgreference
#!python
from bgreference import hg19, hg38
# Get 10 bases from chromosome one build hg19
tenbases_hg19 = hg19('1', 12345, size=10)
# Get 10 bases from chromosome one builg hg38
tenbases_hg38 = hg38('1', 12345, size=10)
# Use synonymous sequence names
hg19(2, 23456)
hg19('2', 23456)
hg19('chr2', 23456)
hg19('MT', 234, size=3)
hg19('chrM', 234, size=3)
hg19('chrMT', 234, size=3)
hg19('M', 234, size=3)
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