bids-neuropoly

An open-source BIDS parser.


Install
pip install bids-neuropoly==0.2

Documentation

bids_neuropoly

Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)

API Installation

Recommended installation of stable version is using PyPI and pip:

pip install bids-neuropoly

But you can also install the development version:

git clone https://github.com/neuropoly/bids_neuropoly.git
cd bids_neuropoly
pip install -e .

Convert Dicom to BIDS-compatible Nifti dataset

Installation:

git clone https://github.com/neuropoly/bids_neuropoly.git
cd bids_neuropoly
pip install -r scripts/requirements.txt

Usage:

python scripts/convert_dcm2nii.py -d /Users/julien/Desktop/DICOM -s sub-03 -o /Users/julien/bids_dataset