bids_neuropoly
Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)
API Installation
Recommended installation of stable version is using PyPI and pip
:
pip install bids-neuropoly
But you can also install the development version:
git clone https://github.com/neuropoly/bids_neuropoly.git
cd bids_neuropoly
pip install -e .
Convert Dicom to BIDS-compatible Nifti dataset
Installation:
git clone https://github.com/neuropoly/bids_neuropoly.git
cd bids_neuropoly
pip install -r scripts/requirements.txt
Usage:
python scripts/convert_dcm2nii.py -d /Users/julien/Desktop/DICOM -s sub-03 -o /Users/julien/bids_dataset