Tools and utilities for buoyancy glider data processing.
pip install buoyancy-glider-utils==0.4.5
Glider tools is a Python 3.6+ package designed to process data from the first level of processing to a science ready dataset. The package is designed to easily import data to a standard column format (numpy.ndarray or pandas.DataFrame). Cleaning and smoothing functions are flexible and can be applied as required by the user. We provide examples and demonstrate best practices as developed by the SOCCO Group.
Please cite the original publication of this package and the version that you've used: (in review). Until published, please cite as recomended by the DIO: Gregor, Luke; Ryan-Keogh, Thomas; Nicholson, Sarah-Anne; du Plessis, Marcel; Giddy, Isabelle; Swart, Sebastiaan (2019): GliderTools: A Python toolbox for processing underwater glider data. figshare. Software. DOI: https://doi.org/10.6084/m9.figshare.9724586.v1
To install the core package run: pip install glidertools
.
git clone --depth 1 https://gitlab.com/socco/GliderTools
(--depth 1 reduces the download size)pip install -e ./GliderTools
. This will allow changes you make locally, to be reflected when you import the package in PythonThere are some packages that are not installed by default, as these are large packages or can result in installation errors, resulting in failure to install GliderTools. These should install automatically with pip install <package_name>
:
gsw
: accurate density calculation (may fail in some cases)pykrige
: variogram plotting (installation generally works, except when bundled)plotly
: interactive 3D plots (large package)ion_functions.data.flo_functions
which was written by Christopher Wingard, Craig Risien, Russell Desiderio