chmutil

Utility package to run CHM jobs on clusters


Keywords
chmutil
License
Other
Install
pip install chmutil==0.8.4

Documentation

chmutil

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Utility package to run Cascaded Hierarchical Model (CHM) jobs on clusters.

For more information visit our wiki page

Tools

  • createchmjob.py -- Creates a set of CHM jobs to process a set of images on various compute clusters (Gordon, Comet, & Rocce)
  • checkchmjob.py -- Checks status of jobs generated by createchmjob.py script
  • createchmtrainjob.py -- Creates a CHM train job, runnable on various compute clusters (Comet & Rocce), which teaches CHM how to segment a desired feature. The output from this job is a trained model that is needed as an input for createchmjob.py
  • createchmimage.py -- Simple image conversion utility
  • createprobmapoverlay.py -- Overlays semi-transparent colored probability maps over base image
  • mergetiles.py -- Merges a set of image tiles in a directory into single image
  • chmrunner.py -- Internal tool that runs a CHM task created by createchmjob.py
  • mergetilerunner.py -- Internal tool that runs Merge task created by createchmjob.py

Dependencies

Compatibility

  • Should work on Python 2.7 & 3+ on Linux distributions

Installation

pip install chmutil

Usage

# creates a job assuming images are in ./images and ./trainedmodel has
# chm model
createchmjob.py ./images ./trainedmodel myrun --cluster rocce

License

See LICENSE.txt

Bugs

Please report them here

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.