clipper

A set of scripts for calling peaks on CLIP-seq data


Keywords
CLIP-seq, peaks, bioinformatics
License
GPL-2.0
Install
pip install clipper==0.2.0

Documentation

DOI

CLIPper - CLIP peak enrichment recognition

A tool to detect CLIP-seq peaks.

Please visit our wiki page to learn more about usage of clipper: https://github.com/YeoLab/clipper/wiki/CLIPper-Home

Install:

easy_install clipper

or

python setup.py install

Run

clipper -h

If you use clipper please cite Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.