Searches a specific file.


License
Other
Install
pip install cluster_searcher==0.0.0.41

Documentation

Cluster Searcher

A searcher, for David's clusters

Installation

Prerequisites

  • Python 3.6

Installation

$    (sudo) pip install cluster_searcher

Usage

Launch cluster searcher from the command line

cluster_searcher

Type cmdlist to list the available commands.

Please see Iɴᴛᴇʀᴍᴀᴋᴇ for how to use the application.

Troubleshooting

  • Not found error in KEGG - You're probably pasting the output into a different pathway.
  • False negatives - KEGG wildcards (e.g. Slk1/2 or Slk1_2) and differences in naming (e.g. Slk-beta vs Slkβ). Please check manually.
  • Missing values - Check the pathway (e.g. hsa12345.xml) and the gene name prefix (e.g. hsa) matches.
  • Slow loading files - copy the files locally

Meta

language= python3
type    = arg,cli
host    = bitbucket,pypi
licence = https://www.gnu.org/licenses/agpl-3.0.html