ddbio-ngsflow

Pipeline infrastructure and services for processing next-generation sequencing data


License
MIT
Install
pip install ddbio-ngsflow

Documentation

Overview

docs Documentation Status
tests
Travis-CI Build Status Requirements Status

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A toil based NGS workflow manager

  • Free software: BSD license

Installation

git clone https://github.com/dgaston/ddb-ngsflow
cd ddb-ngsflow
python setup.py install

Documentation

https://ddb-ngsflow.readthedocs.org/

Development

To run the all tests run:

tox

Note, to combine the coverage data from all the tox environments run:

Windows
set PYTEST_ADDOPTS=--cov-append
tox
Other
PYTEST_ADDOPTS=--cov-append tox