dmethylation

Release 0.0.3a3

Homepage PyPI

License
Unlicense
Install
pip install dmethylation==0.0.3a3

Documentation

dmethylation

Dmethylation is a Django app to store the Illumina methylation data. It can be used for Illumina Infinium HumanMethylation450 BeadChip and Infinium MethylationEPIC BeadChip

Quick start

  1. Add "dgenome" to your INSTALLED_APPS setting like this::

    INSTALLED_APPS = [ ... 'dgenome', 'dmethylation', ]

  2. Include the dgenome URLconf in your project urls.py like this::

    url(r'^dmethylation/', include((dmethylation.urls, 'dmethylation'), namespace='dmethylation')),

  3. Run python manage.py makemigrations dgenome to create the dgenome tables.

  4. Run python manage.py makemigrations dmethylation to create the dmethylation tables.

  5. Run python manage.py migrate to create the dmethylation models.

  6. Insert the Illiumina HumanMethylation450 or MethylationEPIC CSV file with the script: bin/load_annotation_HumanMethylation450.py

  7. See available API endpoints:

    /dmethylation/api/

Stats

Dependencies
10
Dependent packages
0
Dependent repositories
0
Total releases
5
Latest release
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0
Contributors
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SourceRank
6

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Releases

0.0.3a3
0.0.2.2a3
0.0.2.1a3
0.0.2a3
0.0.1a3

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