Fastq Statistic
Calculate statistics for Fastq Files.
Requirement
Python: 3.6 or upper
Install
Download the release whl file.
user@linux:~$ python3 -m pip install fastq-statistic
Usage
user@linux:~$ fastq-statistic --help
Usage: fastq-statistic [OPTIONS] READ1 [READ2]
Arguments:
READ1 Read1 fastq path or fastq path [required]
[READ2] Read2 filepath or None
Options:
--sampleid TEXT SampleID, default is the first item of
filename splited by underscore(_)
--result PATH Result csv file name, plot with use the same
name.
--help Show this message and exit.