fastqtools

fastqtools is used to filter , split ,stat raw ngs data.

fastqClean

to clean low qual data, remove adaptor

fastqSplit

to split big fastq files to small ones

fastqStat

to qc fastq data , get q20,q30,gc-content etc.

Installation

by pip:

pip install fastqtools

by git:

git clone https://github.com/vienomics/fastqtools.git