GDF Formatter

This is a simple and flexible Python library to create and format your graphs in GDF.

Installation

You can install this package from PyPi

pip install gdf-formatter

GDF format information

GDF types:

Default Attributes:

For nodes, the default GDF attributes are:

And for edges, the default GDF attributes are:

How to use

Importing the package

from gdf_formatter import Graph

Declaring a graph:

You have 3 different ways to declare a graph. The fist one is using the default constructor which implements the default attributes for GDF format as below

graph = Graph()

You can also define custom nodes and edges attributes by passing a dictionary composed by {attribute:type} through the Graph constructor parameters custom_nodes and custom_edges

node = {'type':'VARCHAR', 'connections':'DOUBLE', 'class':'DOUBLE'}
edge = {'influence':'DOUBLE', 'weight':'DOUBLE'}
graph = Graph(custom_nodes=node, custom_edges=edge)

Another way to do that is defining custom node attributes on the go as a parameter in the constructor as name='TYPE', like that:

graph = Graph(age='INTERGER')
graph2 = Graph(age='INTERGER', size='DOUBLE')

Tips:

• You can use both dictionary and on-the-go methods at the same time
• If you want to overwrite the type of a default attribute you can just pass them in one of the two way above

Adding nodes:

Only the name parameter are required

graph.addNode(name='1', label='Foo', type='t1', connections=2, age=80)

Adding edges:

Only the node1 and node2 parameters are required

graph.addLink(node1='1', node2='2')

Dumping a GDF formatted file:

graph.dump(output_file='output.gdf')

Example

from gdf_formatter import Graph

node = {'type':'VARCHAR', 'connections':'DOUBLE'}
edge = {'influence':'DOUBLE', 'weight':'DOUBLE'}
graph = Graph(custom_nodes=node, custom_edges=edge, allow_equal_nodes=True, age='INTERGER')

graph.addNode(name='1', label='Foo', type='t1', connections=2, age=80)
graph.addNode(name='2', label='Bar', type='t1', connections=3)
graph.addNode(name='3', label='Qux', connections=8, age=21)

graph.addLink(node1='1', node2='2', weight=0.3)
graph.addLink(node1='1', node2='2', weight=8, influence=8)
graph.addLink(node1='2', node2='1', weight=0)
graph.addLink(node1='2', node2='1', weight=0, influence=9)

graph.dump(output_file='output.gdf')

Example output

nodedef>name VARCHAR,label VARCHAR,type VARCHAR,connections DOUBLE,age INTERGER
2,Bar,t1,3,
3,Qux,,8,21
1,Foo,t1,2,80
edgedef>node1 VARCHAR,node2 VARCHAR,weight DOUBLE,influence DOUBLE
2,1,0,9
1,2,8,8
2,1,0,
1,2,0.3,

Credits

GabrielTrettel for creating the library

GrayJack for creating the README