genomespaceio

A library for reading and writing files to GenomeSpace (http://www.genomespace.org)


Keywords
testing, logging, example
License
Other
Install
pip install genomespaceio==0.15

Documentation

genomespace_io

A Python module for reading files from GenomeSpace and writing them back to GenomeSpace. It also allows you to read any GCT file (http://software.broadinstitute.org/cancer/software/genepattern/file-formats-guide#GCT) into a Pandas data frame (or any file that GenomeSpace can convert to GCT.

Installation

You can install from the PYPI test server for now. Eventually it will go onto the main server

pip3 install -i https://testpypi.python.org/pypi genomespaceio --upgrade

Source Code

https://github.com/GenomeSpace/genomespace_io

Required Packages

GenomeSpaceIO can return a GCT file as a Pandas dataframe. Therefor you will need to

import pandas