igv Jupyter Extension

igv-jupyter is tool for JupyterLab which wraps igv.js and integrates with g2nb. With this tool you can render igv.js in a cell and call its API from a user-friendly web form in the notebook. Track data can be loaded from local or remote URLs, or supplied directly.

For programmatic access to igv.js in a Jupyter notebook, see igv-notebook.

Installation

Requirements:

• python >= 3.6.4
• jupyterlab >= 3.0

pip install igv-jupyter