ipyrad

Interactive assembly and analysis of RADseq data sets


Keywords
assembly, genomics, phylogeny, rad-seq
License
GPL-2.0+
Install
pip install ipyrad==0.1.32

Documentation

ipyrad (In development)

Join the chat at https://gitter.im/dereneaton/ipyrad

Interactive assembly and analysis of RAD-seq data sets.

Tutorials

Documentation is in the works. There you can find installation instructions, example tutorials, and a full user guide. Much more on the way.

Installation

ipyrad is available through conda (and pip) with all dependencies included.

What's new?

In addition to a command line interface that will be familiar to pyrad users, ipyrad offers an additional way to interact with the data through writing Python scripts that access the ipyrad API. This provides an easier way to construct branching assembly architectures in which data sets are assembled under a number of parameter options. We also include several new analysis tools, including __svd4tet__, a program for fast quartet inference and super-tree construction (docs coming).

License

GPLv3

Contributors