KlustaViewa
KlustaViewa is a graphical interface for the manual stage of spike sorting.
NOTE: this legacy project is superseded by the phy KwikGUI that comes with the KlustaSuite.
Installation
Installing KlustaViewa may be tricky because it relies on very old dependencies.
- Make sure that you have miniconda installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
- Download the environment file:
-
Open a terminal (on Windows,
cmd
, not Powershell) in the directory where you saved the file and type:conda install conda-env=2.4 conda install conda=3 conda env create -n klustaviewa -f environment-XXX.yml # replace `XXX` by your system source activate klustaviewa # omit the `source` on Windows conda install numpy=1.8 --yes
Done! Now, to use KlustaViewa, you have to first type
source activate klustaviewa
in a terminal (omit thesource
on Windows), and then callklustaviewa yourfile.kwik
.
Documentation
There is a user guide here but it is quite old, so some instructions refer to a previous version.
Credits
KlustaViewa is developed by Cyrille Rossant, Max Hunter, and Kenneth Harris, in the Cortexlab, University College London.