kmtools

Bits of reusable code to make our lives easier.


License
MIT
Install
pip install kmtools==0.0.27

Documentation

kmtools

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Bits of reusable code to make our lives easier.

Follows the Whole Sort of General Mish Mash design principle.

Contents

Tools

Structure tools

Using kmbio instead of biopython leads to substantially better performance (> 2x with lots of room for improvement).

To do

  • [ ] Cythonize more bottlenecks to improve performance.
  • [ ] Add Python / Cython code for generating biological assemblies.

Contributing

  • Make sure all tests pass before merging into master.
  • Follow the PEP8 / PyFlake / Flake8 / etc. guidelines.
  • Add tests for new code.
  • Try to document things.
  • Break any / all of the above if you have a good reason.