lim

Lim is an efficient implementation of Generalized Linear Mixed Models for genomic analysis.

Install

The recommended way of installing it is via conda

conda install -c conda-forge limix-inference
conda install h5py pandas tabulate pytest

and then

pip install lim

Running the tests

After installation, you can test it

python -c "import lim; lim.test()"

as long as you have pytest.

Documentation

Refer to the documentation for detailed information.

Authors

• Christoph Lippert - https://github.com/clippert
• Danilo Horta - https://github.com/Horta
• Oliver Stegle - https://github.com/ostegle
• Paolo Francesco Casale - https://github.com/fpcasale

License

This project is licensed under the MIT License -- see the LICENSE file for details.