magcluster

Magnetosome gene cluster annotation, screening and mapping tool

Installation

We recommend creating a new environment for the magcluster release being installed through conda.

wget https://github.com/RunJiaJi/magcluster/releases/download/0.0.7/magcluster-0.0.7.yml

conda env create -n magcluster --file magcluster-0.0.7.yml

# OPTIONAL CLEANUP
rm magcluster-0.0.7.yml

General Usage

Magnetosome gene annotation:

magcluster maga XXX.fa

Magnetosome gene screen:

magcluster magsc XXX.faa XXX.gbk

Magnetosome gene cluster mapping:

magcluster magm XXX_clean.gbk