Magnetosome Gene Clusters Analyzer


Keywords
bioinformatics, magnetosome-gene-cluster, magnetotactic-bacteria
Licenses
GPL-3.0/GPL-3.0+
Install
pip install magcluster==0.0.9

Documentation

magcluster

Magnetosome gene cluster annotation, screening and mapping tool

Installation

We recommend creating a new environment for the magcluster release being installed through conda.

wget https://github.com/RunJiaJi/magcluster/releases/download/0.0.7/magcluster-0.0.7.yml

conda env create -n magcluster --file magcluster-0.0.7.yml

# OPTIONAL CLEANUP
rm magcluster-0.0.7.yml

General Usage

Magnetosome gene annotation:

magcluster maga XXX.fa

Magnetosome gene screen:

magcluster magsc XXX.faa XXX.gbk

Magnetosome gene cluster mapping:

magcluster magm XXX_clean.gbk