ndex-webapp-python-exporters

Command line exporters written in Python used by the NDEx REST service.

Supported Exporters

• Graphml

Tools

• ndex_exporters.py Takes file in NDEx CX format and converts to format specified as a command line argument

Dependencies

• argparse
• ndex2

Compatibility

• Python 3.5+

Installation

pip install ndex_webapp_python_exporters

Or directly from repo (requires git)

git clone https://github.com/ndexbio/ndex_webapp_python_exporters.git
cd ndex_webapp_python_exporters
python setup.py install

Example usage

The example below assumes foo.cx is a file in NDEx CX format

cat foo.cx | ndex_exporters.py graphml > foo.graphml

NOTE: For the above example, the network Thyroid Cancer can be downloaded as a file named foo.cx in NDEx CX format.

Credits

• Graphml exporter derived from code developed by Cecilia Zhang

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.