phys2bids

phys2bids is a python3 library meant to format physiological files in BIDS. It was born for AcqKnowledge files (BIOPAC), and at the moment it supports .acq files as well as .txt files obtained by labchart (ADInstruments) and GE MRI files.

If you use phys2bids in your work, please support it by citing the zenodo DOI of the version you used. You can find the latest version here

We also support gathering all relevant citations via DueCredit.

Read the latest documentation for more information on phys2bids!

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Tested OSs

While all version until 2.6.2 were tested on Linux and Windows, starting from version 2.7 onward we had to drop Windows testing. The reason is related to the cost of running such tests: for each Windows test, we can run up to 8 tests on Linux instead. Partial Windows testing might be reintroduced in future releases.

Hence, while we cannot ensure that phys2bids will run on Windows, however we don't see any reason it shouldn't. Besides, it will run on Linux Subsistems.

We apologise for the discomfort.

We're looking for code contributors, but any suggestion/bug report is welcome! Feel free to open issues!

This project follows the all-contributors specification. Contributions of any kind welcome!

Contributors ✨

Thanks goes to these wonderful people (emoji key):

_{Daniel Alcalá} 🎨	_{Apoorva Ayyagari} 🖋 🔣 📖	_{Katie Bottenhorn} 💻 🧑‍🏫 👀	_{Molly Bright} 🖋 🔣 🤔
_{Cesar Caballero Gaudes} 🖋 🔣 🤔	_{Inés Chavarría} 💻	_{Vicente Ferrer} 🐛 💻 📖 👀 ⚠️	_{Yaroslav Halchenko} 🚇
_{Soichi Hayashi} 🐛	_{Vittorio Iacovella} 💻	_{François Lespinasse} 💻 ⚠️	_{Ross Markello} 🐛 💻 🖋 🤔 🚇 👀 ⚠️ 🧑‍🏫
_{Stefano Moia} 💻 🖋 🔣 🤔 🚇 📆 👀 📖 🧑‍🏫	_{Robert Oostenveld} 🤔 👀	_{David Romero-Bascones} 🐛 💻 📖	_{Taylor Salo} 🤔 💻 👀
_{Rachael Stickland} 🐛 💻 🔣 📖 📓 👀	_{Eneko Uruñuela} 🐛 💻 🚇 👀 ⚠️ 🧑‍🏫	_merelvdthiel 💻	_{Kristina Zvolanek} 🔣 🖋 📖
_{Marcel Zwiers} 🔌	_victox5 📖

License

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.