pileup2sam

Convert pileup to SAM


Keywords
htslib sam bam pileup samtools
License
Apache-2.0
Install
pip install pileup2sam==0.3.0

Documentation

pileup2sam

A partial implementation of a pileup to SAM format conversion tool.

  • This is an inefficient and naive implementation, but it seems to do the trick.
  • Does not support indels!

Example usage

pileup2sam -r test/cases/simulated.fa test/cases/simulated.head100.pileup out.sam