polyloxpgen

Barcode purging and pgen (probability of generation) calculation for Polylox data.


License
MIT
Install
pip install polyloxpgen==0.1.4

Documentation

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polyloxpgen

Barcode purging and pgen (probability of generation) calculation for Polylox data.

Methods

polyloxpgen contains two main methods

  • polylox_merge: merge samples from multiple raw barcode files (RPBPBR output)
  • polylox_pgen: purge barcodes and compute pgen for single or multiple samples

Installation

to use polyloxpgen and the above methods, install it via

pip install polyloxpgen

Docs / Workflow example

please visit the example.ipynb jupyter notebook for a workflow example and some further notes (in the examples folder)

References / Final notes