preqc-lr

preqc-lr is a software tool that performs quality control checks to long read sequencing data.

Install

To install from source:

git clone https://github.com/simpsonlab/preqc-lr.git
cd preqc-lr
python setup.py install

What is preqc-lr?

With the emergence of new long read sequencing technology such as Pacbio Single Molecule, Real-Time (SMRT) S equencing technology and Oxford Nanopore Technologies (ONT), there is a need for a method that assesses sequ encing quality prior to analyses. With preqc-lr we enable users to visualize metrics of quality.

There are two components to preqc-lr:

1. calculate
2. report