pubmed is used to:
-
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
-
Read csv file downloaded from pubmed search page.
Install
pip install pubmed
Usage
Query Online
from pubmed import PubMed
# http://www.ncbi.nlm.nih.gov/pubmed/26471457
pm = PubMed(26471457)
print pm.title
print pm.authors
print pm.pub_date
print pm.journal_name
print pm.journal_full_name
or
print pm.get_title()
print pm.get_authors()
print pm.get_pub_date()
print pm.get_journal_name()
print pm.get_journal_full_name()
or
print pm.getTitle()
print pm.getAuthors()
print pm.getPubDate()
print pm.getJournalName()
print pm.getJournalFullName()Read Download File
read csv files download from pubmed
from pubmed import OpenCsv
f = OpenCsv('./pubmed_result.csv')
for p in f:
print(p.title)
print(p.authors)
print(p.PMID)demo
>>> pm = PubMed(26471457)
>>> pm.authors
['Tu W', 'Zhang H', 'Liu J', 'Hu QN']
>>> pm.title
'BioSynther: a customized biosynthetic potential explorer.'
>>> pm.pub_date
'2016 Feb 1'
>>>
