PACKMAN: PACKing and Motion ANalysis
This package focuses on studying molecular structures and their dynamics using a simple yet informative property known as Protein Packing. Over the last few years, we have worked on several techniques to capture and quantify the protein packing, resulting in a few publications. This package has all the code to repeat and further develop these techniques.
DOCUMENTATION
INSTALLATION
- Installing with pip (Recommended)
pip install py-packman
- Installing from source
git clone https://github.com/Pranavkhade/PACKMAN
cd PACKMAN
python setup.py install
HOW TO USE
PACKMAN, along with its components, can be accessed via Graphical User Interface (GUI), Command-line Interface (CLI), and Application programming interface (API).
For the GUI, please run the following command.
python -m packman gui
OR
python3 -m packman gui
For the CLI and API, please read the tutorials & documentation.
REPORTING ISSUES
Click here to report issues with any aspect of the package. Please search for the resolved issues first.
WEB SERVERS
RELATED RESEARCH ARTICLES
ACKNOWLEDGEMENTS
The development of the PACKMAN package webservers are supported by NSF grant DBI 1661391. The authors also thank ResearchIT@Iowa State University for helping with many aspects of computing.
