pyGOrilla

Python wrapper for GOrilla - gene ontology enrichment for ranked gene lists


Keywords
mHG, GOrilla, Gene Ontology
License
MIT
Install
pip install pyGOrilla==0.1.3

Documentation

PyGOrilla

Python wrapper for GOrilla

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists E Eden, R Navon, I Steinfeld, D Lipson, Z Yakhini - BMC bioinformatics, 2009

Installation:

pip install pyGOrilla

Usage options:

from pyGOrilla import GOrillaEvaluator

GOr = GOrillaEvaluator() # note, this constructor can take parameters. See code for documentation.

restable = GOrillaEvaluator.evaluate_list(genelist, outputfile (optional))

GOrillaEvaluator.evaluate_file_folder(inputpath)

Enjoy!