pyLattice

A python library for advanced lattice light-sheet image analysis

Welcome!

Installation

clone or download the repository

pip install pylattice
pip install -r requirements.txt
cd source/jupyter
jupyter notebook

in browser open source/jupyter/latticeFrame_showFrame.ipynb

Test data

A small test data set can be found here: https://www.dropbox.com/sh/2n86tvgtr1a6i3h/AAAcJ84K0qdqq3USCtO1jUcra?dl=0

Manual

Please read the manual to get started.

FAQ

Lattice Light-Sheet Microscopy

References

• scikit http://scikit-image.org
• ChimeraX https://www.cgl.ucsf.edu/chimerax/
• llsm tools https://github.com/francois-a/llsmtools
• utrack https://www.utsouthwestern.edu/labs/danuser/software/#utrack_ancs
• Joh Schöneberg http://www.schoeneberglab.org
• The Betzig Lab https://www.janelia.org/lab/betzig-lab
• The Drubin/Barnes Lab https://drubinbarneslab.berkeley.edu