pyROSE

A Python Package for Rank Ordering of Super-Enhancers

Introduction

pyROSE is an easy to install and run python library of ROSE (Rank Ordering of Super-Enhancers) http://younglab.wi.mit.edu/super_enhancer_code.html

If you use this library for your analysis please cite the following papers:

• Warren A. Whyte, David A. Orlando, Denes Hnisz, Brian J. Abraham, Charles Y. Lin, Michael H. Kagey, Peter B. Rahl, Tong Ihn Lee and Richard A. Young, Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes, Cell 153, 307-319, April 11, 2013

• Jakob Lovén, Heather A. Hoke, Charles Y. Lin, Ashley Lau, David A. Orlando, Christopher R. Vakoc, James E. Bradner, Tong Ihn Lee, and Richard A. Young, Selective Inhibition of Tumor Oncogenes by Disruption of Super-enhancers, Cell 153, 320-334, April 11, 2013

How to install

Instal from PyPi

 pip install pyrose

Install from the source

 python setup.py install

How to run

pyrose --help