Ley Lab Quick Viewer
Qiime 2This tool launches a simple web server to quickly visualize the contents locate into the data
folder from
a Qiime 2 visualization artifact, i.e. files produced by Qiime 2 with extension *.qzv
.
- Free software: MIT license
Installation
You can install this tool on a Python 3.5+ environment using either PIP
pip install qiime_2_ll_quick_viewer
or Conda
conda install -c leylabmpi qiime_2_ll_quick_viewer
Usage
Given a Qiime 2 visualization artifact e.g. demux.qzv
you can run this command on your server:
$ qiime_2_ll_quick_viewer --filename /full_path_to/demux.qzv
By default, qiime_2_ll_quick_viewer will launch a web server on the port 8089 but you can change it for the one you want with the option --port XXXX
.
Then, you can for example open a SSH tunnel to the remote port opened on your server by qiime_2_ll_quick_viewer with this command:
$ ssh -L 8089:localhost:8089 user@your_server
Finally, open a browser and go to this address: http://localhost:8089.
Command options:
-f, --filename TEXT Full path to a Qiime2 visualization file (*.qzv). [required]
-p, --port INTEGER Port to launch the web server. [required]
-h, --help Show the help info and exit.
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.