Cryoef plugin
This plugin provides a wrapper for cryoEF program.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
- Stable version
scipion installp -p scipion-em-cryoef
-
Developer's version
- download repository
git clone -b devel https://github.com/scipion-em/scipion-em-cryoef.git
- install
scipion installp -p /path/to/scipion-em-cryoef --devel
CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/cryoEF-1.1.0
, if you want to change it, set CRYOEF_HOME in scipion.conf` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:
scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF
Supported versions
1.1.0
Protocols
- orientation analysis
Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf