Simple Virtuoso migrate "quick" documentation

Quick start

simple-virtuoso-migrate is very simple. The best way to understand how it works is installing and using it.

You can install it by :

$ pip install simple-virtuoso-migrate

Now, copy the file sitecustomize.py to Python library directory. After installing, for usage tips type:

$ virtuoso-migrate --help

Understanding how it works

virtuoso-migrate is an ontology versioning and migration tool inspired on simple-db-migrate.

This tool helps you to manage and track your ontology changes.

The main difference between simple-db-migrate and this tool is that while simple-db-migrate uses multiple migrations files, virtuoso-migrate basically deals with versions (git tags) of one single ttl file. The migrations (i.e., actions to be performed) are inferred through the comparison of two versions of the ttl file.

A little explanation about load options:

-g  <version>   Use this option to evolve your ontology. Inform the ontology version You want to go to.
                It will compare the current version of the ontology with the target one and infer the operations
                needed to equalize them.

Example:

$ virtuoso-migrate -c /projects/confs/confg.cnf -g 2.0.0

-a <file_name>  Use this option when you want to load data into your graph in the form of a ttl file.

$ virtuoso-migrate -c /projects/confs/config.cnf -i /projects/dumps/load.ttl

The command above loads the content of a given file into the database without any verification.

Debugging a migration performed through the migration process:

--showsparql   Use this option to make Virtuoso-migrate show all the commands that
               were executed on the database. It increases the output messages

Similarly, you can showing SPARQL queries without executing them:

$ virtuoso-migrate -c /projects/confs/config.cnf -i /projects/dumps/load.ttl --showsparql

--showsparqlonly  Use this option to make simple-virtuoso-migrate show all the comands but without executing them.
                  It doesn't make any changes.

$ virtuoso-migrate -c /projects/confs/loads.cnf -i /projects/dumps/loads.ttl --showsparqlonly

Note: If no load is specified it will migrate to the last version of your ontology.

Configuration file parameters

You can create a configuration file and inform it at command line using "-c " or you can just inform parameters directly ate command line. The options are:

DATABASE_HOST             Virtuoso instance host's name
DATABASE_USER             Your database login name
DATABASE_PASSWORD         Your database password.
                          In some cases you will not want to write database passwords in the config files
                          (e.g. production databases passwords). You can configure the password to be asked
                          for you in the command line setting up this parameter with "<<ask_me>>".
DATABASE_PORT             Virtuoso isql's port
DATABASE_ENDPOINT         Sparql endpoit address . "http://localhost:8890/sparql"
DATABASE_GRAPH            Graph name
DATABASE_MIGRATIONS_DIR   Absolute path of the ontology ttl file.
DATABASE_ONTOLOGY         Ontology ttl file name.
VIRTUOSO_DIRS_ALLOWED     This option exists to be used with "-a" option. It must be the same directory
                          configured for the Virtuoso Server in the parameter DirsAlowed of virtuoso.ini.
MIGRATION_GRAPH           Name of the graph that keeps migration's information.
RUN_AFTER                 Path of a python script that is invoked after the migration is executed.
RUN_AFTER_PARAMS          The value of this property can be retrieved as-it-is from the run_after script.

Querying your migrations

Migration history is kept on the graph http://migration.example.com/.

Data properties description:

owl#versionInfo   Ontology version
produto           Product name (i.e, graph name)
origem            <-m / -i >
commited          When the migration was performed
endpoint          Sparql endpoint used
usuario           Username used
ambiente          Virtuoso instance name

Useful queries:

Listing all migrations performed on graph http://example.com/class/ during the period between 2012-06-30 and 2012-07-03 (using xsd:dateTime)

PREFIX mig: <http://example.com/>
SELECT DISTINCT ?source ?endpoint ?user ?env ?when
FROM <http://migration.example.com/>
WHERE {
    ?s  ?p            ?o;
        mig:produto   'http://example.com/class/';
        mig:origen    ?source;
        mig:commited  ?when;
        mig:endpoint  ?endpoint;
        mig:ambiente  ?env;
        mig:usuario   ?user.
    FILTER ( ?when > "2012-06-30T00:00:00"^^xsd:dateTime &&
             ?when < "2012-07-03T00:00:00"^^xsd:dateTime ).
} ORDER BY ?when