tbvcfreport

Parses SnpEff generated VCF and generates an HTML report.


Keywords
neo4j, vcf, tuberculosis, h37rv, snpeff, combat-tb-neodb, galaxy-project, variant-annotations, vcf-files
License
GPL-3.0
Install
pip install tbvcfreport==0.1.7

Documentation

vcfreport

A tool to generate an HTML report from SnpEff produced vcf files.

Usage

$ git clone https://github.com/COMBAT-TB/vcf-report.git
$ cd vcf-report
$ virtualenv envname
$ source envname/bin/activate
$ pip install -r requirements.txt
$ pip install -e .
$ vcfreport --help
$ vcfreport generate vcf_direcory/

This will generate a {vcf-file-name}.html file in pwd.