ukbc

Interface to faciliate filtering of UKBioBank data


Keywords
python, ukbiobank
License
MIT
Install
pip install ukbc==1.2

Documentation

UKBCrunch

Requirements

It is highly recommended to install the Anaconda python distribution which contains most dependencies (see https://www.anaconda.com/download/).

Viewing documentation

See: https://ukbcrunch.readthedocs.io

Installation

Option 1 (easy)
  1. Open a command line and enter: pip install ukbc
For latest version:
  1. Clone repository
  2. Enter ukbc folder (containing setup.py) and run command pip install .

Basic usage

import ukbc
my_ukbc=ukbc.UKBcrunch(html_file='path/to/html/file', csv_file='path/to/csv/file')
Epilepsy=Filtering.select_by_multiple(ukbc,on_illness='epilepsy')

To launch the GUI:

import ukbc
ukbc.GUI.start()

Contributing

Feel free to contribute via pull requests